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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
751
ChIP-seq
Assay category
751
DNA binding
241
DNA accessibility
Target of assay
374
histone
374
histone modification
372
transcription factor
232
broad histone mark
142
narrow histone mark
89
RNA binding protein
81
recombinant protein
31
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
97
May, 2019
64
April, 2019
63
November, 2018
58
October, 2019
December, 2017
45
October, 2018
32
August, 2017
30
December, 2018
23
June, 2019
21
January, 2019
6
October, 2017
Available data
1484
bam
1278
bigWig
1213
bed narrowPeak
763
fastq
751
bigBed narrowPeak
398
tagAlign
114
bed broadPeak
79
bigBed broadPeak
38
bed bed3+
3
tar
1
tagAlign bed3+
Organism
745
Homo sapiens
Biosample type
353
cell line
341
tissue
57
primary cell
Organ
302
liver
94
brain
71
vasculature
69
blood vessel
64
heart
59
pancreas
54
blood
54
bodily fluid
48
limb
24
kidney
24
nerve
22
epithelium
21
artery
15
connective tissue
14
musculature of body
12
spleen
10
vein
6
adipose tissue
2
eye
Project
751
AMP
Genome assembly (visualization)
717
GRCh38
695
hg19
Lab
751
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
December, 2017
BIOSAMPLE
ASSAY
751 results
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Clear Filters
ChIP-seq
cell line
HepG2
293
GM12878
54
Panc1
6
tissue
heart left ventricle
28
body of pancreas
26
tibial nerve
24
kidney
18
tibial artery
18
+ See 26 more…
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
skeletal muscle satellite cell
7
mesenchymal stem cell
6
kidney epithelial cell
4
+ See 8 more…
See all biosamples
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