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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
744
ChIP-seq
180
DNase-seq
5
ATAC-seq
FAIRE-seq
Assay category
744
DNA binding
185
DNA accessibility
Target of assay
395
transcription factor
344
histone
344
histone modification
221
broad histone mark
123
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
72
November, 2018
64
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
22
August, 2017
21
January, 2019
6
October, 2017
Available data
2779
bam
2512
bigWig
1478
bed narrowPeak
1330
tsv
947
fastq
929
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
923
Homo sapiens
Biosample type
557
tissue
355
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
115
brain
88
heart
87
kidney
84
limb
67
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
929
AMP
Genome assembly (visualization)
893
GRCh38
857
hg19
Lab
929
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
FAIRE-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
929 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
liver
38
2
heart left ventricle
28
3
kidney
18
13
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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