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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
FAIRE-seq
3
ATAC-seq
DNase-seq
Assay category
34
DNA binding
3
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
3
October, 2019
1
August, 2017
1
May, 2019
Available data
426
bam
404
fastq
232
bigWig
200
tsv
178
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
39
bed broadPeak
37
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
17
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
37
Homo sapiens
Biosample type
32
cell line
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
32
liver
3
connective tissue
1
adipose tissue
1
limb
1
musculature of body
Project
37
AMP
Genome assembly (visualization)
GRCh38
772
hg19
Lab
37
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
assay_title!
DNase-seq
FAIRE-seq
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
cell line
HepG2
32
in vitro differentiated cells
adipocyte
2
tissue
adipose tissue
1
muscle of leg
1
primary cell
skeletal muscle myoblast
1
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