Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
32
DNA binding
10
DNA accessibility
Target of assay
31
transcription factor
4
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
30
November, 2017
4
August, 2017
4
October, 2019
2
July, 2019
1
May, 2019
1
November, 2018
Available data
431
bam
405
fastq
237
bigWig
200
tsv
183
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
42
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
42
Homo sapiens
Biosample type
30
cell line
6
tissue
4
primary cell
2
in vitro differentiated cells
Organ
30
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
42
AMP
Genome assembly (visualization)
GRCh38
954
hg19
Lab
42
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
2
inconsistent control read length
inconsistent control run_type
assembly!
GRCh38
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
42 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
30
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
in vitro differentiated cells
adipocyte
2
See all biosamples
Download