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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
FAIRE-seq
3
ATAC-seq
2
DNase-seq
2
pCHi-C
Assay category
32
DNA binding
10
DNA accessibility
Target of assay
31
transcription factor
4
RNA binding protein
1
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
30
November, 2017
4
August, 2017
4
October, 2019
2
July, 2019
2
March, 2020
1
May, 2019
1
November, 2018
Available data
429
bam
403
fastq
235
bigWig
200
tsv
183
bed narrowPeak
161
txt
153
zippedFastqFolder
150
tagAlign
42
bigBed narrowPeak
38
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
16
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
44
Homo sapiens
Biosample type
30
cell line
6
tissue
4
in vitro differentiated cells
4
primary cell
Organ
30
liver
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
44
AMP
Genome assembly (visualization)
GRCh38
934
hg19
Lab
44
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
pCHi-C
cell line
HepG2
30
tissue
adipose tissue
1
frontal cortex
1
islet of Langerhans
1
kidney
1
muscle of leg
1
+ See 1 more…
in vitro differentiated cells
adipocyte
2
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
See all biosamples
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