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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
4
FAIRE-seq
3
ATAC-seq
2
DNase-seq
Assay category
184
DNA binding
9
DNA accessibility
Target of assay
85
histone
85
histone modification
66
control
45
broad histone mark
40
narrow histone mark
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
72
August, 2017
56
November, 2017
31
May, 2020
12
October, 2019
8
August, 2021
8
October, 2017
2
July, 2019
1
February, 2021
1
May, 2019
1
May, 2021
1
November, 2018
Available data
405
fastq
404
bam
232
bigWig
190
tsv
184
bed narrowPeak
161
txt
153
zippedFastqFolder
150
tagAlign
43
bigBed narrowPeak
38
bed broadPeak
21
bedpe bed3+
19
hic
18
bed bedMethyl
18
bigBed bedMethyl
16
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
192
Homo sapiens
Biosample type
128
tissue
36
cell line
24
in vitro differentiated cells
5
primary cell
Organ
87
liver
37
brain
25
connective tissue
16
musculature of body
13
pancreas
9
adipose tissue
3
blood vessel
3
epithelium
vasculature
2
artery
2
heart
1
kidney
1
limb
1
vein
Project
193
AMP
Genome assembly (visualization)
GRCh38
1078
hg19
Lab
193
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
organ_slims!
vasculature
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
tissue
liver
51
skeletal muscle tissue
15
islet of Langerhans
9
1
brain
8
cingulate gyrus
8
+ See 19 more…
cell line
HepG2
35
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
14
2
neural progenitor cell
7
pancreatic PP cell
1
primary cell
skeletal muscle myoblast
2
2
hepatocyte
1
See all biosamples
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