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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
56
ChIP-seq
23
DNase-seq
13
single cell RNA-seq
1
MPRA
Assay category
72
Transcription
56
DNA binding
23
DNA accessibility
Target of assay
52
histone
52
histone modification
36
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
89
February, 2021
57
August, 2021
54
November, 2017
23
June, 2019
6
May, 2022
4
February, 2023
2
November, 2018
1
October, 2022
Available data
394
bam
350
fastq
198
tsv
179
bed narrowPeak
160
tagAlign
157
txt
153
zippedFastqFolder
113
bigWig
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
235
Homo sapiens
Biosample type
224
tissue
7
primary cell
5
cell line
Organ
88
bone element
69
kidney
62
brain
8
pancreas
6
epithelium
4
liver
4
skeleton
3
heart
1
blood vessel
1
connective tissue
1
vasculature
Project
236
AMP
Genome assembly (visualization)
998
GRCh38
hg19
Lab
173
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
236 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
13
layer of hippocampus
16
caudate nucleus
11
1
substantia nigra
10
+ See 21 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
MIN6
1
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