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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
Assay category
20
DNA binding
Target of assay
13
transcription factor
10
chromatin remodeller
7
histone
7
histone modification
4
RNA binding protein
4
narrow histone mark
3
broad histone mark
1
recombinant protein
Date released
8
November, 2017
6
August, 2017
5
November, 2018
1
October, 2018
Available data
56
bam
56
bigWig
56
fastq
54
bed narrowPeak
31
bigBed narrowPeak
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
20
Homo sapiens
Biosample type
13
cell line
6
tissue
1
primary cell
Organ
14
liver
5
pancreas
Project
20
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
20
inconsistent control read length
9
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
cell line
HepG2
13
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
skeletal muscle myoblast
1
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