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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
744
ChIP-seq
180
DNase-seq
ATAC-seq
4
FAIRE-seq
Assay category
744
DNA binding
184
DNA accessibility
Target of assay
395
transcription factor
344
histone
344
histone modification
221
broad histone mark
123
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
73
November, 2018
64
April, 2019
54
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
21
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2692
bam
2458
bigWig
1328
tsv
1243
bed narrowPeak
928
bigBed narrowPeak
920
fastq
298
tagAlign
271
bed broadPeak
236
bigBed broadPeak
232
bed bed3+
158
txt
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
922
Homo sapiens
Biosample type
558
tissue
355
cell line
primary cell
15
in vitro differentiated cells
Organ
355
liver
116
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
spleen
9
connective tissue
8
adipose tissue
3
eye
Project
928
AMP
Genome assembly (visualization)
891
GRCh38
856
hg19
Lab
928
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
928 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
See all biosamples
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