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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
726
ChIP-seq
178
DNase-seq
3
ATAC-seq
3
FAIRE-seq
Assay category
726
DNA binding
184
DNA accessibility
Target of assay
395
transcription factor
326
histone
326
histone modification
209
broad histone mark
117
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
73
November, 2018
64
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2559
bam
2290
bigWig
1373
bed narrowPeak
1241
tsv
910
bigBed narrowPeak
720
fastq
246
bed broadPeak
235
bigBed broadPeak
225
tagAlign
203
bed bed3+
161
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
910
Homo sapiens
Biosample type
539
tissue
355
cell line
primary cell
16
in vitro differentiated cells
Organ
350
liver
116
brain
88
heart
88
kidney
84
limb
62
blood vessel
62
vasculature
55
pancreas
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
spleen
10
connective tissue
8
adipose tissue
3
eye
Project
910
AMP
Genome assembly (visualization)
871
GRCh38
838
hg19
Lab
910
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
month_released!
August, 2017
BIOSAMPLE
ASSAY
910 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
33
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 52 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
2
See all biosamples
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