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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
726
ChIP-seq
111
DNase-seq
5
ATAC-seq
3
FAIRE-seq
Assay category
726
DNA binding
119
DNA accessibility
Target of assay
395
transcription factor
326
histone
326
histone modification
211
broad histone mark
115
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
95
June, 2019
93
May, 2019
73
November, 2018
56
October, 2019
50
December, 2017
46
April, 2019
45
October, 2018
30
December, 2018
23
August, 2017
21
January, 2019
6
October, 2017
1
July, 2019
Available data
2670
bam
2413
bigWig
1321
bed narrowPeak
1312
tsv
949
fastq
845
bigBed narrowPeak
298
tagAlign
205
bed broadPeak
168
bed bed3+
168
bigBed broadPeak
99
txt
25
bed bedMethyl
25
bigBed bedMethyl
19
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
3
tar
2
ibed
1
bedpe
1
csv
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
839
Homo sapiens
Biosample type
474
tissue
354
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
116
brain
88
heart
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
845
AMP
Genome assembly (visualization)
806
GRCh38
774
hg19
Lab
845
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
kidney
BIOSAMPLE
ASSAY
845 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
heart
7
18
+ See 44 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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