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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
732
ChIP-seq
179
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
732
DNA binding
188
DNA accessibility
Target of assay
389
transcription factor
338
histone
338
histone modification
217
broad histone mark
121
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
69
November, 2018
64
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
27
December, 2018
23
August, 2017
15
January, 2019
6
October, 2017
2
July, 2019
Available data
2759
bam
2500
bigWig
1468
bed narrowPeak
1329
tsv
925
fastq
920
bigBed narrowPeak
298
tagAlign
272
bed broadPeak
235
bed bed3+
235
bigBed broadPeak
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
914
Homo sapiens
Biosample type
548
tissue
355
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
116
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
spleen
10
adipose tissue
3
eye
Project
920
AMP
Genome assembly (visualization)
880
GRCh38
848
hg19
Lab
920
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
spleen
BIOSAMPLE
ASSAY
920 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 52 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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