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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
682
ChIP-seq
175
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
682
DNA binding
184
DNA accessibility
Target of assay
392
transcription factor
290
histone
290
histone modification
185
broad histone mark
105
narrow histone mark
81
recombinant protein
80
RNA binding protein
33
chromatin remodeller
5
other context
other post-translational modification
Date released
304
November, 2017
160
June, 2019
70
November, 2018
64
April, 2019
54
May, 2019
50
December, 2017
45
October, 2018
37
October, 2019
30
December, 2018
23
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2625
bam
2425
bigWig
1405
bed narrowPeak
1264
tsv
944
fastq
866
bigBed narrowPeak
292
tagAlign
267
bed broadPeak
231
bed bed3+
230
bigBed broadPeak
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
860
Homo sapiens
Biosample type
496
tissue
353
cell line
primary cell
17
in vitro differentiated cells
Organ
354
liver
116
brain
88
heart
88
kidney
84
limb
69
pancreas
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
10
adipose tissue
10
spleen
3
eye
Project
866
AMP
Genome assembly (visualization)
826
GRCh38
794
hg19
Lab
866
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
target.investigated_as!
other post-translational modification
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
866 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 48 more…
cell line
HepG2
291
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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