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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
25
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
420
DNA binding
50
DNA accessibility
Target of assay
336
transcription factor
79
histone
79
histone modification
78
recombinant protein
72
RNA binding protein
41
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
253
November, 2017
54
November, 2018
40
June, 2019
27
December, 2018
23
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1369
bigWig
1350
bam
821
bed narrowPeak
714
fastq
484
tsv
470
bigBed narrowPeak
133
tagAlign
102
bed broadPeak
102
bigBed broadPeak
61
bed bed3+
12
bedpe bed3+
11
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
txt
2
ibed
Organism
470
Homo sapiens
Biosample type
tissue
351
cell line
102
primary cell
17
in vitro differentiated cells
Organ
305
liver
70
epithelium
54
blood
54
bodily fluid
29
pancreas
20
vasculature
17
connective tissue
16
blood vessel
13
vein
11
brain
11
kidney
9
musculature of body
5
heart
3
eye
Project
470
AMP
Genome assembly (visualization)
470
hg19
443
GRCh38
Lab
470
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
470 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
289
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 20 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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