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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
28
DNase-seq
24
ATAC-seq
Assay category
412
DNA binding
52
DNA accessibility
Target of assay
339
transcription factor
81
recombinant protein
72
RNA binding protein
68
histone
68
histone modification
35
narrow histone mark
33
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
253
November, 2017
56
November, 2018
45
June, 2019
27
December, 2018
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
10
October, 2019
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1392
bam
1317
bigWig
978
fastq
804
bed narrowPeak
470
tsv
464
bigBed narrowPeak
154
tagAlign
153
zippedFastqFolder
101
bed broadPeak
101
bigBed broadPeak
62
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
464
Homo sapiens
Biosample type
tissue
355
cell line
92
primary cell
17
in vitro differentiated cells
Organ
309
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
464
AMP
Genome assembly (visualization)
454
hg19
427
GRCh38
Lab
464
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
464 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 21 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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