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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
307
ChIP-seq
2
DNase-seq
Assay category
307
DNA binding
2
DNA accessibility
Target of assay
279
transcription factor
81
recombinant protein
53
RNA binding protein
25
histone
25
histone modification
21
chromatin remodeller
14
broad histone mark
11
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
44
November, 2018
14
December, 2017
2
June, 2019
Available data
393
bam
382
fastq
357
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
16
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
309
Homo sapiens
Biosample type
293
cell line
tissue
14
in vitro differentiated cells
2
primary cell
Organ
309
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
309
AMP
Genome assembly (visualization)
305
hg19
277
GRCh38
Lab
309
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
309 results
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ChIP-seq
DNase-seq
cell line
HepG2
293
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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