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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
31
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
410
DNA binding
54
DNA accessibility
Target of assay
338
transcription factor
81
recombinant protein
71
RNA binding protein
67
histone
67
histone modification
36
narrow histone mark
31
broad histone mark
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
47
June, 2019
27
December, 2018
21
October, 2019
19
August, 2017
15
January, 2019
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1191
bam
1135
bigWig
836
fastq
699
bed narrowPeak
464
bigBed narrowPeak
389
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
464
Homo sapiens
Biosample type
561
tissue
355
cell line
109
primary cell
17
in vitro differentiated cells
Organ
295
liver
62
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
17
blood vessel
17
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
464
AMP
Genome assembly (visualization)
453
hg19
428
GRCh38
Lab
464
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
BIOSAMPLE
ASSAY
464 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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