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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
299
ChIP-seq
2
DNase-seq
Assay category
299
DNA binding
2
DNA accessibility
Target of assay
277
transcription factor
81
recombinant protein
51
RNA binding protein
20
chromatin remodeller
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
44
November, 2018
8
October, 2019
Available data
522
bam
467
bigWig
367
fastq
350
bed narrowPeak
301
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
301
Homo sapiens
Biosample type
561
tissue
301
cell line
109
primary cell
17
in vitro differentiated cells
Organ
293
liver
54
blood
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
301
AMP
Genome assembly (visualization)
297
hg19
269
GRCh38
Lab
301
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
301 results
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ChIP-seq
DNase-seq
cell line
HepG2
293
Panc1
6
1
glomerular visceral epithelial cell
1
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