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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
9
ATAC-seq
1
DNase-seq
Assay category
14
DNA binding
10
DNA accessibility
Target of assay
12
histone
12
histone modification
7
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
14
December, 2017
4
February, 2021
3
February, 2023
2
October, 2019
1
August, 2017
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
24
Homo sapiens
Biosample type
561
tissue
355
cell line
109
primary cell
24
in vitro differentiated cells
Organ
14
epithelium
14
liver
7
connective tissue
Project
24
AMP
Genome assembly (visualization)
24
hg19
15
GRCh38
Lab
21
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte
14
adipocyte
6
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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