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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
29
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
56
DNA binding
52
DNA accessibility
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
47
June, 2019
18
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
612
bigWig
608
bam
408
fastq
294
bed narrowPeak
270
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
108
Homo sapiens
Biosample type
559
tissue
325
cell line
108
primary cell
16
in vitro differentiated cells
Organ
61
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
108
AMP
Genome assembly (visualization)
104
GRCh38
101
hg19
Lab
108
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
13
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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