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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
Date released
4
February, 2023
2
August, 2021
2
February, 2021
1
May, 2022
Available data
433
bam
407
fastq
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
9
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
cell line
1
primary cell
1
tissue
Organ
7
connective tissue
1
liver
1
musculature of body
Project
9
AMP
Genome assembly (visualization)
18
hg19
GRCh38
Lab
7
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
assembly!
GRCh38
BIOSAMPLE
ASSAY
9 results
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ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
primary cell
osteoblast
1
tissue
skeletal muscle tissue
1
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