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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
30
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
43
DNA binding
33
DNA accessibility
Target of assay
38
histone
38
histone modification
20
narrow histone mark
18
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
47
June, 2019
23
October, 2019
4
May, 2019
1
August, 2017
1
November, 2020
Available data
1485
bam
1397
bigWig
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
76
Homo sapiens
Biosample type
tissue
66
primary cell
8
cell line
2
in vitro differentiated cells
Organ
36
epithelium
17
connective tissue
17
kidney
17
vasculature
15
blood vessel
13
vein
9
musculature of body
7
pancreas
6
heart
5
brain
3
eye
2
liver
Project
76
AMP
Genome assembly (visualization)
72
GRCh38
69
hg19
Lab
76
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
files.file_type!
fastq
biosample_type!
tissue
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
kidney epithelial cell
4
1
+ See 20 more…
cell line
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
2
See all biosamples
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