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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
29
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
43
DNA binding
32
DNA accessibility
Target of assay
38
histone
38
histone modification
20
narrow histone mark
18
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
47
June, 2019
23
October, 2019
4
May, 2019
1
August, 2017
November, 2020
Available data
1479
bam
1392
bigWig
fastq
831
bed narrowPeak
520
tsv
480
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
108
bed broadPeak
108
bigBed broadPeak
67
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
75
Homo sapiens
Biosample type
tissue
65
primary cell
8
cell line
2
in vitro differentiated cells
Organ
36
epithelium
17
kidney
17
vasculature
16
connective tissue
15
blood vessel
13
vein
9
musculature of body
7
pancreas
6
heart
5
brain
3
eye
2
liver
Project
75
AMP
Genome assembly (visualization)
71
GRCh38
68
hg19
Lab
75
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
files.file_type!
fastq
biosample_type!
tissue
month_released!
November, 2020
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
kidney epithelial cell
4
1
+ See 19 more…
cell line
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
2
See all biosamples
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