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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
26
DNase-seq
Assay category
27
DNA binding
26
DNA accessibility
Target of assay
22
histone
22
histone modification
12
narrow histone mark
10
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
47
June, 2019
October, 2019
4
May, 2019
1
August, 2017
1
November, 2020
Available data
1421
bam
1350
bigWig
fastq
795
bed narrowPeak
516
tsv
458
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
104
bed broadPeak
104
bigBed broadPeak
64
bed bed3+
11
bed bedMethyl
11
bedpe bed3+
11
bigBed bedMethyl
9
hic
7
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
53
Homo sapiens
Biosample type
tissue
53
primary cell
Organ
22
epithelium
16
kidney
15
connective tissue
9
musculature of body
6
heart
5
brain
4
vasculature
3
eye
2
blood vessel
2
liver
Project
53
AMP
Genome assembly (visualization)
52
GRCh38
46
hg19
Lab
53
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
files.file_type!
fastq
biosample_type!
tissue
month_released!
October, 2019
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
kidney epithelial cell
4
1
cardiac muscle cell
2
1
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