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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
26
DNase-seq
2
ATAC-seq
Assay category
33
DNA binding
28
DNA accessibility
Target of assay
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
45
June, 2019
10
October, 2019
4
May, 2019
1
August, 2017
1
November, 2020
Available data
1392
bam
1317
bigWig
fastq
804
bed narrowPeak
470
tsv
464
bigBed narrowPeak
154
tagAlign
153
zippedFastqFolder
101
bed broadPeak
101
bigBed broadPeak
62
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
61
Homo sapiens
Biosample type
tissue
51
primary cell
8
cell line
2
in vitro differentiated cells
Organ
36
epithelium
17
connective tissue
17
kidney
17
vasculature
blood vessel
13
vein
9
musculature of body
7
pancreas
6
heart
5
brain
3
eye
2
liver
Project
61
AMP
Genome assembly (visualization)
58
GRCh38
55
hg19
Lab
61
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
files.file_type!
fastq
biosample_type!
tissue
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
kidney epithelial cell
4
1
cardiac muscle cell
2
1
+ See 17 more…
cell line
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
2
See all biosamples
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