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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
197
DNase-seq
22
Hi-C
3
ATAC-seq
3
FAIRE-seq
Assay category
313
DNA binding
203
DNA accessibility
22
3D chromatin structure
Target of assay
299
histone
299
histone modification
187
broad histone mark
112
narrow histone mark
14
transcription factor
12
RNA binding protein
Date released
210
June, 2019
97
May, 2019
74
October, 2019
64
April, 2019
57
November, 2017
14
October, 2018
10
March, 2020
3
October, 2022
2
August, 2021
2
July, 2019
2
November, 2019
1
August, 2017
1
March, 2023
1
November, 2020
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
bedpe
1
tagAlign bed3+
1
vcf
Organism
538
Homo sapiens
Biosample type
450
tissue
72
primary cell
10
cell line
6
in vitro differentiated cells
Organ
113
brain
105
kidney
97
heart
84
limb
82
vasculature
80
blood vessel
49
musculature of body
42
epithelium
32
pancreas
26
nerve
25
artery
19
connective tissue
18
ureter
15
vein
6
eye
4
liver
2
adipose tissue
Project
534
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
509
GRCh38
462
hg19
Lab
532
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
29
inconsistent ontology term
4
audit script error
files.file_type!
fastq
bedpe
BIOSAMPLE
ASSAY
538 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
kidney
18
13
1
1
heart left ventricle
28
3
1
heart
7
18
1
tibial nerve
24
2
tibial artery
18
2
+ See 51 more…
primary cell
endothelial cell of umbilical vein
10
2
2
1
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
kidney epithelial cell
4
1
+ See 24 more…
cell line
Panc1
6
1
EndoC_BH1
1
HepG2
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
2
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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