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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
678
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
678
DNA binding
189
DNA accessibility
Target of assay
395
transcription factor
278
histone
278
histone modification
176
broad histone mark
102
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
252
November, 2017
163
June, 2019
93
May, 2019
73
November, 2018
64
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
21
January, 2019
17
August, 2017
2
July, 2019
Available data
2783
bam
2516
bigWig
1482
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
867
Homo sapiens
Biosample type
504
tissue
346
cell line
primary cell
17
in vitro differentiated cells
Organ
347
liver
88
heart
88
kidney
84
limb
65
brain
63
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
867
AMP
Genome assembly (visualization)
835
hg19
827
GRCh38
Lab
867
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
biosample_type!
primary cell
BIOSAMPLE
ASSAY
867 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 51 more…
cell line
HepG2
284
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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