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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
29
DNase-seq
22
ATAC-seq
Assay category
57
DNA binding
51
DNA accessibility
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
14
September, 2018
12
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
tar
Organism
108
Homo sapiens
Biosample type
561
tissue
352
cell line
108
primary cell
17
in vitro differentiated cells
Organ
60
epithelium
22
pancreas
20
vasculature
16
blood vessel
16
kidney
15
connective tissue
12
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
108
AMP
Genome assembly (visualization)
105
GRCh38
101
hg19
Lab
108
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
tar
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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