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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
2
DNase-seq
2
Hi-C
Assay category
353
DNA binding
2
3D chromatin structure
2
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
8
October, 2019
1
August, 2021
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
357
Homo sapiens
Biosample type
571
tissue
357
cell line
113
primary cell
24
in vitro differentiated cells
Organ
294
liver
54
blood
54
bodily fluid
8
pancreas
2
epithelium
1
kidney
Project
357
AMP
Genome assembly (visualization)
353
hg19
323
GRCh38
Lab
356
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
357 results
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ChIP-seq
DNase-seq
Hi-C
cell line
HepG2
293
1
GM12878
54
Panc1
6
1
EndoC_BH1
1
glomerular visceral epithelial cell
1
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