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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
177
DNase-seq
10
Hi-C
4
FAIRE-seq
3
ATAC-seq
Assay category
377
DNA binding
184
DNA accessibility
10
3D chromatin structure
Target of assay
312
histone
312
histone modification
204
broad histone mark
108
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
48
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
7
March, 2020
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
1
August, 2021
1
November, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
565
Homo sapiens
Biosample type
571
tissue
357
cell line
113
primary cell
24
in vitro differentiated cells
Organ
116
brain
91
heart
87
kidney
84
limb
65
pancreas
63
blood vessel
63
vasculature
50
liver
40
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
571
AMP
Genome assembly (visualization)
555
GRCh38
502
hg19
Lab
570
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
571 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
ATAC-seq
tissue
liver
38
2
1
heart left ventricle
28
3
1
kidney
18
13
1
body of pancreas
26
4
heart
7
18
1
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