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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
745
ChIP-seq
186
DNase-seq
27
ATAC-seq
22
Hi-C
5
FAIRE-seq
Assay category
745
DNA binding
218
DNA accessibility
22
3D chromatin structure
Target of assay
401
transcription factor
339
histone
339
histone modification
206
broad histone mark
133
narrow histone mark
92
RNA binding protein
78
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
258
November, 2017
187
June, 2019
97
May, 2019
74
October, 2019
71
November, 2018
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
10
March, 2020
6
October, 2017
5
September, 2017
3
October, 2022
2
August, 2021
2
July, 2019
2
November, 2019
1
March, 2019
1
November, 2020
Available data
3016
bigWig
2998
bam
1598
bed narrowPeak
1402
tsv
1008
fastq
963
bigBed narrowPeak
298
bed broadPeak
262
bigBed broadPeak
250
bed bed3+
238
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
979
Homo sapiens
Biosample type
504
tissue
353
cell line
107
primary cell
21
in vitro differentiated cells
Organ
356
liver
98
kidney
96
pancreas
94
heart
85
vasculature
84
limb
81
blood vessel
76
epithelium
65
brain
54
blood
54
bodily fluid
49
musculature of body
27
connective tissue
26
nerve
25
artery
18
ureter
15
vein
13
spleen
10
adipose tissue
6
eye
Project
982
AMP
3
HPAP
Genome assembly (visualization)
999
GRCh38
985
hg19
Lab
979
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
29
inconsistent ontology term
28
inconsistent control
4
audit script error
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
BIOSAMPLE
ASSAY
985 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
liver
38
2
1
kidney
18
13
1
1
heart left ventricle
28
3
1
body of pancreas
26
2
tibial nerve
24
2
+ See 43 more…
cell line
HepG2
289
1
GM12878
54
Panc1
6
1
EndoC_BH1
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
2
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
skeletal muscle satellite cell
7
+ See 20 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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