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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
22
ATAC-seq
17
DNase-seq
6
Hi-C
1
FAIRE-seq
Assay category
40
DNA accessibility
36
DNA binding
6
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
18
June, 2019
15
October, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
3
October, 2022
1
March, 2020
1
November, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
82
Homo sapiens
Biosample type
66
primary cell
14
in vitro differentiated cells
2
cell line
Organ
360
liver
127
brain
105
kidney
98
pancreas
97
heart
86
vasculature
84
limb
82
blood vessel
82
epithelium
54
blood
54
bodily fluid
49
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
15
vein
13
spleen
10
adipose tissue
6
eye
Project
79
AMP
3
HPAP
Genome assembly (visualization)
76
hg19
75
GRCh38
Lab
79
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
4
audit script error
files.file_type!
txt
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
2
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
pancreatic acinar cell
5
1
kidney epithelial cell
4
1
+ See 12 more…
in vitro differentiated cells
hepatocyte
14
cell line
EndoC_BH1
1
glomerular visceral epithelial cell
1
See all biosamples
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