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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ChIP-seq
5
DNase-seq
2
Hi-C
1
ATAC-seq
Assay category
352
DNA binding
6
DNA accessibility
2
3D chromatin structure
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
6
August, 2017
2
June, 2019
1
August, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
360
Homo sapiens
Biosample type
294
cell line
50
tissue
14
in vitro differentiated cells
2
primary cell
Organ
360
liver
127
brain
105
kidney
98
pancreas
97
heart
86
vasculature
84
limb
82
blood vessel
82
epithelium
54
blood
54
bodily fluid
49
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
15
vein
13
spleen
10
adipose tissue
6
eye
Project
360
AMP
Genome assembly (visualization)
356
hg19
326
GRCh38
Lab
359
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
cell line
HepG2
293
1
tissue
liver
38
2
1
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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