Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
364
ChIP-seq
2
DNase-seq
Assay category
364
DNA binding
2
DNA accessibility
Target of assay
333
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
22
histone
22
histone modification
11
broad histone mark
11
narrow histone mark
4
control
2
other context
2
other post-translational modification
Date released
252
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
8
February, 2021
8
October, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
366
Homo sapiens
Biosample type
742
tissue
366
cell line
198
primary cell
57
in vitro differentiated cells
Organ
296
liver
54
blood
54
bodily fluid
7
pancreas
6
artery
6
blood vessel
6
heart
6
vasculature
1
epithelium
1
kidney
Project
366
AMP
Genome assembly (visualization)
359
hg19
328
GRCh38
Lab
366
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
366 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
296
GM12878
54
Panc1
6
1
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
+ See 1 more…
See all biosamples
Download