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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
66
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
5
FAIRE-seq
Assay category
DNA binding
301
DNA accessibility
52
Transcription
41
DNA methylation
Date released
187
June, 2019
134
May, 2022
19
September, 2020
14
September, 2018
12
October, 2019
10
August, 2017
10
November, 2018
5
September, 2017
2
July, 2019
1
November, 2020
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
394
Homo sapiens
Biosample type
205
primary cell
184
tissue
3
in vitro differentiated cells
2
cell line
Organ
120
epithelium
112
pancreas
80
kidney
36
limb
33
brain
33
musculature of body
30
heart
18
ureter
13
connective tissue
12
vasculature
10
blood vessel
6
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
241
AMP
153
HPAP
Genome assembly (visualization)
231
GRCh38
218
hg19
Lab
241
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
394 results
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Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
pancreatic acinar cell
9
pancreatic ductal cell
4
+ See 23 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 42 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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