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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
55
ChIP-seq
52
single cell RNA-seq
41
WGBS
29
DNase-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
112
DNA accessibility
55
DNA binding
52
Transcription
41
DNA methylation
Target of assay
45
histone
45
histone modification
25
narrow histone mark
20
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
47
June, 2019
19
September, 2020
17
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
611
bigWig
607
bam
407
fastq
293
bed narrowPeak
270
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
99
tagAlign
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
260
Homo sapiens
Biosample type
560
tissue
355
cell line
260
primary cell
17
in vitro differentiated cells
Organ
141
epithelium
102
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
153
HPAP
107
AMP
Genome assembly (visualization)
103
GRCh38
100
hg19
Lab
153
Klaus Kaestner, Upenn
107
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
260 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
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