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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
196
DNase-seq
66
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
4
FAIRE-seq
Assay category
377
DNA binding
287
DNA accessibility
52
Transcription
41
DNA methylation
Target of assay
305
histone
305
histone modification
191
broad histone mark
114
narrow histone mark
72
transcription factor
27
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
203
June, 2019
134
May, 2022
64
April, 2019
59
November, 2017
58
May, 2019
50
December, 2017
45
October, 2018
42
August, 2017
29
October, 2019
19
September, 2020
17
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2691
bam
2548
bigWig
1465
tsv
1292
bed narrowPeak
925
fastq
604
bigBed narrowPeak
378
tagAlign
257
bed bed3+
246
bed broadPeak
209
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
19
bedpe bed3+
18
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
751
Homo sapiens
Biosample type
499
tissue
cell line
241
primary cell
17
in vitro differentiated cells
Organ
164
pancreas
155
epithelium
127
brain
103
kidney
94
heart
84
limb
vasculature
79
blood vessel
65
liver
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
604
AMP
153
HPAP
Genome assembly (visualization)
593
GRCh38
530
hg19
Lab
604
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
27
inconsistent control
23
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
organ_slims!
vasculature
BIOSAMPLE
ASSAY
757 results
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ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 48 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
skeletal muscle myoblast
14
2
pancreatic acinar cell
9
+ See 20 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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