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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
42
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
63
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
3
October, 2019
Available data
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
156
Homo sapiens
Biosample type
153
primary cell
2
in vitro differentiated cells
1
tissue
Organ
80
epithelium
80
pancreas
3
connective tissue
1
adipose tissue
Project
153
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
Lab
153
Klaus Kaestner, Upenn
3
AMP-T2D consortium
organ_slims!
vasculature
files.file_type!
bam
BIOSAMPLE
ASSAY
156 results
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Clear Filters
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
in vitro differentiated cells
adipocyte
2
tissue
adipose tissue
1
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