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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
297
ChIP-seq
2
DNase-seq
Assay category
297
DNA binding
2
DNA accessibility
Target of assay
272
transcription factor
66
recombinant protein
40
RNA binding protein
23
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
November, 2018
27
December, 2018
15
January, 2019
8
October, 2019
Available data
521
bam
465
bigWig
366
fastq
348
bed narrowPeak
299
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
299
Homo sapiens
Biosample type
544
tissue
299
cell line
109
primary cell
17
in vitro differentiated cells
Organ
249
liver
42
blood
42
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
299
AMP
Genome assembly (visualization)
297
hg19
267
GRCh38
Lab
299
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
19
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
299 results
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ChIP-seq
DNase-seq
cell line
HepG2
249
GM12878
42
Panc1
6
1
glomerular visceral epithelial cell
1
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