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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
28
DNase-seq
1
FAIRE-seq
Assay category
90
DNA binding
29
DNA accessibility
Target of assay
89
histone
89
histone modification
58
broad histone mark
31
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
59
November, 2017
28
June, 2019
25
May, 2019
6
October, 2017
November, 2018
1
July, 2019
Available data
233
bam
211
bigWig
195
bed narrowPeak
119
bigBed narrowPeak
118
tagAlign
39
bed broadPeak
30
bed bed3+
30
bigBed broadPeak
26
tsv
13
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
119
Homo sapiens
Biosample type
114
tissue
5
primary cell
Organ
307
liver
125
brain
104
kidney
94
heart
88
pancreas
84
limb
vasculature
79
blood vessel
76
epithelium
47
musculature of body
42
blood
42
bodily fluid
27
connective tissue
26
nerve
25
artery
18
ureter
13
vein
9
adipose tissue
9
spleen
6
eye
Project
119
AMP
Genome assembly (visualization)
118
GRCh38
57
hg19
Lab
119
AMP-T2D consortium
Audit category:
3
missing controlled_by
month_released!
November, 2018
organ_slims!
vasculature
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
12
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 14 more…
primary cell
astrocyte of the cerebellum
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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