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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
738
ChIP-seq
Assay category
738
DNA binding
DNA accessibility
Target of assay
395
transcription factor
338
histone
338
histone modification
216
broad histone mark
122
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
93
May, 2019
64
April, 2019
63
November, 2018
50
December, 2017
48
October, 2019
45
October, 2018
30
December, 2018
21
January, 2019
18
August, 2017
October, 2017
Available data
2500
bam
2308
bigWig
1328
tsv
1093
bed narrowPeak
898
fastq
738
bigBed narrowPeak
284
tagAlign
157
txt
90
bed broadPeak
58
bigBed broadPeak
54
bed bed3+
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
732
Homo sapiens
Biosample type
371
tissue
353
cell line
primary cell
14
in vitro differentiated cells
Organ
352
liver
82
brain
61
heart
59
pancreas
57
blood vessel
57
vasculature
54
blood
54
bodily fluid
48
limb
24
nerve
21
artery
18
kidney
14
epithelium
12
spleen
6
adipose tissue
6
connective tissue
6
musculature of body
Project
738
AMP
Genome assembly (visualization)
705
GRCh38
682
hg19
Lab
738
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
October, 2017
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
738 results
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Clear Filters
ChIP-seq
tissue
liver
38
heart left ventricle
28
body of pancreas
26
tibial nerve
24
kidney
18
+ See 26 more…
cell line
HepG2
293
GM12878
54
Panc1
6
in vitro differentiated cells
hepatocyte
14
See all biosamples
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