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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
1
Hi-C
Assay category
128
DNA binding
1
3D chromatin structure
Target of assay
70
transcription factor
31
histone
31
histone modification
25
control
16
narrow histone mark
15
broad histone mark
6
RNA binding protein
5
chromatin remodeller
Date released
381
November, 2017
288
August, 2017
210
June, 2019
97
May, 2019
94
December, 2017
88
November, 2018
76
February, 2023
74
October, 2018
73
September, 2018
70
October, 2019
64
April, 2019
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
2
July, 2019
1
March, 2019
1
November, 2020
Available data
129
fastq
128
bam
102
bed narrowPeak
102
bigWig
80
bigBed narrowPeak
15
bed bed3+
Organism
129
Homo sapiens
Biosample type
55
tissue
43
in vitro differentiated cells
28
cell line
3
stem cell
Organ
64
liver
27
blood
27
bodily fluid
19
epithelium
13
embryo
7
spleen
Project
129
AMP
Genome assembly (visualization)
107
GRCh38
107
hg19
Lab
129
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
Hi-C
tissue
liver
38
right lobe of liver
10
spleen
7
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
GM12878
27
HepG2
1
stem cell
hESC
3
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