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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
175
DNase-seq
4
FAIRE-seq
1
ATAC-seq
Assay category
371
DNA binding
180
DNA accessibility
Target of assay
311
histone
311
histone modification
204
broad histone mark
107
narrow histone mark
60
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
46
October, 2019
40
October, 2018
36
December, 2017
20
August, 2017
16
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1409
bam
1251
bigWig
931
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
545
Homo sapiens
Biosample type
551
tissue
355
cell line
94
primary cell
14
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
connective tissue
3
eye
Project
551
AMP
Genome assembly (visualization)
546
GRCh38
483
hg19
Lab
551
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
551 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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