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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
1
DNase-seq
Assay category
353
DNA binding
1
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
7
October, 2019
Available data
531
bam
472
bigWig
427
fastq
389
bed narrowPeak
354
bigBed narrowPeak
84
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
354
Homo sapiens
Biosample type
561
tissue
354
cell line
48
primary cell
3
in vitro differentiated cells
Organ
293
liver
54
blood
54
bodily fluid
7
pancreas
epithelium
1
kidney
Project
354
AMP
Genome assembly (visualization)
350
hg19
322
GRCh38
Lab
354
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
DNase-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
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