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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
Assay category
86
DNA binding
Target of assay
398
transcription factor
362
histone
362
histone modification
228
broad histone mark
134
narrow histone mark
86
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
33
November, 2017
21
November, 2018
11
October, 2018
6
January, 2019
4
May, 2019
3
April, 2019
2
August, 2017
2
December, 2017
2
December, 2018
2
June, 2019
Available data
95
bam
93
bigWig
92
bed narrowPeak
86
bigBed narrowPeak
85
fastq
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
1
tar
Organism
86
Homo sapiens
Biosample type
61
cell line
20
tissue
5
primary cell
Organ
55
liver
10
blood
10
bodily fluid
epithelium
6
connective tissue
6
heart
6
pancreas
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
2
kidney
1
artery
1
eye
Project
86
AMP
Genome assembly (visualization)
85
hg19
81
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
cell line
HepG2
51
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
subcutaneous adipose tissue
2
ascending aorta
1
+ See 6 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
cardiac fibroblast
1
cardiac muscle cell
1
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