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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
422
ChIP-seq
31
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
422
DNA binding
56
DNA accessibility
Target of assay
339
transcription factor
81
recombinant protein
78
histone
78
histone modification
72
RNA binding protein
40
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
44
June, 2019
27
December, 2018
23
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1481
bam
1394
bigWig
981
fastq
830
bed narrowPeak
524
tsv
478
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
108
bed broadPeak
108
bigBed broadPeak
67
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
478
Homo sapiens
Biosample type
tissue
355
cell line
106
primary cell
17
in vitro differentiated cells
Organ
309
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
eye
Project
478
AMP
Genome assembly (visualization)
467
hg19
440
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
organ_slims!
eye
biosample_type!
tissue
BIOSAMPLE
ASSAY
478 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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