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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
177
DNase-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
384
DNA binding
209
DNA accessibility
Target of assay
315
histone
315
histone modification
198
broad histone mark
117
narrow histone mark
69
transcription factor
26
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
177
June, 2019
82
May, 2019
63
November, 2017
62
October, 2019
50
December, 2017
45
October, 2018
42
August, 2017
18
April, 2019
17
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2665
bam
2479
bigWig
1365
tsv
1234
bed narrowPeak
931
fastq
593
bigBed narrowPeak
378
tagAlign
240
bed bed3+
233
bed broadPeak
196
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
18
bedpe bed3+
18
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
587
Homo sapiens
Biosample type
473
tissue
cell line
103
primary cell
17
in vitro differentiated cells
Organ
127
brain
103
kidney
heart
84
limb
84
pancreas
83
vasculature
79
blood vessel
75
epithelium
65
liver
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
593
AMP
Genome assembly (visualization)
581
GRCh38
521
hg19
Lab
593
AMP-T2D consortium
Audit category:
27
inconsistent control
20
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
heart
biosample_type!
cell line
BIOSAMPLE
ASSAY
593 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
body of pancreas
26
4
tibial nerve
24
2
brain
6
14
+ See 46 more…
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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