Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
421
ChIP-seq
29
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
421
DNA binding
54
DNA accessibility
Target of assay
339
transcription factor
81
recombinant protein
77
histone
77
histone modification
72
RNA binding protein
39
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
41
June, 2019
27
December, 2018
23
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1406
bam
1330
bigWig
981
fastq
815
bed narrowPeak
475
bigBed narrowPeak
467
tsv
154
tagAlign
153
zippedFastqFolder
106
bed broadPeak
106
bigBed broadPeak
65
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
475
Homo sapiens
Biosample type
tissue
355
cell line
103
primary cell
17
in vitro differentiated cells
Organ
309
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
heart
3
eye
Project
475
AMP
Genome assembly (visualization)
465
hg19
437
GRCh38
Lab
475
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
organ_slims!
heart
biosample_type!
tissue
BIOSAMPLE
ASSAY
475 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
Download