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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
696
ChIP-seq
144
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
696
DNA binding
153
DNA accessibility
Target of assay
395
transcription factor
296
histone
296
histone modification
187
broad histone mark
109
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
131
June, 2019
87
May, 2019
73
November, 2018
64
April, 2019
50
December, 2017
45
October, 2018
30
December, 2018
23
August, 2017
21
January, 2019
11
October, 2019
6
October, 2017
2
July, 2019
Available data
2669
bam
2425
bigWig
1390
bed narrowPeak
1323
tsv
949
fastq
849
bigBed narrowPeak
298
tagAlign
237
bed broadPeak
200
bed bed3+
200
bigBed broadPeak
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
843
Homo sapiens
Biosample type
477
tissue
355
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
116
brain
88
heart
88
kidney
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
849
AMP
Genome assembly (visualization)
810
GRCh38
777
hg19
Lab
849
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
limb
biosample_type!
primary cell
BIOSAMPLE
ASSAY
849 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
heart
7
18
+ See 47 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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