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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
22
ATAC-seq
21
DNase-seq
1
FAIRE-seq
Assay category
57
DNA binding
44
DNA accessibility
Target of assay
49
histone
49
histone modification
28
broad histone mark
21
narrow histone mark
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
34
October, 2019
20
June, 2019
14
December, 2017
14
September, 2018
7
May, 2019
5
September, 2017
4
November, 2017
3
August, 2017
Available data
418
bam
385
bigWig
257
fastq
225
bed narrowPeak
213
tsv
101
bigBed narrowPeak
80
zippedFastqFolder
26
bed broadPeak
26
bigBed broadPeak
25
bed bed3+
13
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
101
Homo sapiens
Biosample type
61
primary cell
25
tissue
14
in vitro differentiated cells
1
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
101
AMP
Genome assembly (visualization)
100
GRCh38
95
hg19
Lab
101
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 12 more…
tissue
tibial artery
18
2
coronary artery
3
2
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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